Changelog

2.2.1 - 2025-12-24

• Require Java 11+
• Support Synchro-PASEF and Slice-PASEF formats
• Significantly improve the running speed
• Reduce memory footprint
• Various bug fixes and improvements

1.3.3 - 2025-06-30

• Require Java 11+
• Fix a randomness issue
• Various bug fixes and improvements

1.2.5 - 2025-05-03

• Require Java 11+
• Various bug fixes and improvements
• Optimized Isotope-Filtering Process: improved the robust isotope filtering step that removes MS1 scans attributable to isotopic peaks, cutting out redundant measurements.
• Reduced Output Size: the effect of isotope removal yields substantially smaller mzML files.

1.1.5 - 2024-07-03

• Require Java 11+
• Fix index out of range bug: https://github.com/Nesvilab/FragPipe/issues/1623

1.1.3 - 2024-05-15

• Require Java 11+
• First public version